STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1449TonB-dependent receptor; TonB protein interacts with outer membrane receptor proteins that carry out high-affinity binding and energy-dependent uptake of specific substrates into the periplasmic space. (740 aa)    
Predicted Functional Partners:
Dshi_1450
NnrS is a putative heme-Cu protein (NnrS) and a member of the short-chain dehydrogenase family.
 
    0.901
ssuB2
Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
    0.897
ssuA2
Putative sulfonate/nitrate transport system substrate-binding protein; Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import.
 
    0.891
ssuC2
Binding-protein-dependent transport systems inner membrane component; Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import.
 
    0.883
Dshi_0567
TonB family protein; Unsure GC frame plot; TIGRFAM: TonB family protein; low swissprot hit to Protein tonB from Pseudomonas putida; low Ref ZP hit toPutative TonB protein [Roseobacter sp. SK209-2-6].
  
 
 0.829
tolA
Conserved hypothetical protein; Outer membrane integrity and transport system Tol-Pal: TolQRAB-Pal.
  
 
 0.829
nnrS
PFAM: NnrS family protein KEGG: pde:Pden_4166 NnrS family protein; no swissprot; good gb hit to NnrS [Rhodobacter capsulatus]; NCBI conserved domains: NnrS.
 
     0.742
ssuA1
Putative sulfonate/nitrate transport system substrate-binding protein; Low swissprot hit to Putative aliphatic sulfonates-binding protein precursor from Escherichia coli K12; good Ref YP hit toTwin-arginine translocation pathway signal [Paracoccus denitrificans PD1222]; COG0715 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components;TIGR01409 Twin-arginine translocation pathway signal.
 
    0.740
ssuC1
PFAM: binding-protein-dependent transport systems inner membrane component; COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; low swissprot toNitrate transport permease protein nrtB from Phormidium laminosum; high Ref ZP hit toBinding-protein-dependent transport systems inner membrane component [Paracoccus denitrificans PD1222].
 
    0.710
ssuB1
Sulfonate/nitrate/taurine transport system ATP-binding; PFAM: ABC transporter related SMART: AAA ATPase; COG1116 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; NCBI conserved domains: ssuB; middle swissprot hit to Aliphatic sulfonates import ATP-binding protein ssuB 1 from Xanthomonas axonopodis pv. citri; good Ref ZP hit to ABC transporter [Paracoccus denitrificans PD1222].
 
    0.672
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.