STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dshi_1547Putative carbohydrate kinase; SUPERFAMILY: SSF53613 Ribokinase-like; COG: COG0524, Sugar kinase, ribokinase family; PFAM: PF00294; ribokinase family. (321 aa)    
Predicted Functional Partners:
psuG
Indigoidine synthase A-like protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
 
 
 0.986
Dshi_1546
Hypothetical protein; PFAM: PF04367; COG: COG2928 - Uncharacterized conserved protein.
  
    0.750
hisA
Swiss-Prot: Q28NK3- 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase PFAM: histidine biosynthesis protein.
  
    0.597
rbsB1
Ribosomal protein S2; PFAM: pfam00318, TIGRFAM: 1011, PANTHER: PTHR12534, SPRINT: PR00395, PROSITE: PS00963, PS00962, SUPERFAMILY: SSF52313; Belongs to the universal ribosomal protein uS2 family.
  
  
 0.562
iolD
Thiamine pyrophosphate protein central region; Putative enzyme involved in myo-inositol catabolism, Thiamine-dependent; Belongs to the TPP enzyme family.
  
  
 0.501
iolB
Conserved hypothetical protein.
  
  
 0.482
iolB2
Myo-inositol catabolism IolB domain protein.
  
  
 0.482
Dshi_2842
PFAM: basic membrane lipoprotein SSF53822: Periplasmic binding protein-like I superfamily.
 
    0.482
rih
Inosine/uridine-preferring nucleoside hydrolase; Preference for inosine/uridine.
 
  
 0.431
Dshi_0533
PFAM: Xylose isomerase domain protein TIM barrel; NCBI conserved domains: cd00019, AP2Ec, AP endonuclease family 2; middle swissprot hit to Uncharacterized protein sll1304 from Synechocystis sp. PCC 6803; high Ref YP hit to Xylose isomerase domain protein TIM barrel [Sinorhizobium medicae WSM419].
  
  
 0.424
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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