STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1565Acylase precursor; PFAM: PF01804, COG: COG2366 - Protein related to penicillin acylase; putative penicillin acylase. (827 aa)    
Predicted Functional Partners:
Dshi_1564
Hypothetical protein; PROSITE: PS51257, PFAM: pfam04366, COG: COG2930 - Uncharacterized conserved protein.
 
    0.639
Dshi_2095
Conserved hypothetical protein.
  
    0.594
Dshi_1928
PFAM: PF04340 - Protein of unknown function, DUF484.
  
    0.547
Dshi_0684
NCBI conserved domains: pfam06620 DUF1150, Protein of unknown function, COG5568, Uncharacterized small protein; no significant swissprot; low Ref ZP hit to hypothetical protein OB2597_07215 [Oceanicola batsensis HTCC2597].
  
    0.498
Dshi_1183
Conserved hypothetical protein; Conserved in Rhodobacteraceae.
  
    0.497
Dshi_0832
Conserved hypothetical protein; Conserved in Rhodobacteraceae.
  
    0.455
mreC
TIGRFAM: rod shape-determining protein MreC PFAM: Rod shape-determining protein MreC; NCBI conserved domains: PRK10900, cell wall structural complex MreBCD transmembrane component MreC; low swissprot hit to Rod shape-determining protein mreC from Haemophilus influenzae; high Ref ZP hit to rod shape-determining protein MreC [Roseovarius nubinhibens ISM].
  
    0.446
Dshi_2205
Conserved hypothetical protein.
  
    0.440
Dshi_1562
Conserved hypothetical protein.
 
    0.434
Dshi_3102
KEGG: rsh:Rsph17029_2670 hypothetical protein.
  
     0.415
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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