STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrEEfflux-multidrug resistance protein; SUPERFAMILY: Multidrug resistance efflux transporter EmrE; SWISSPROT P23895: Multidrug transporter emrE; PFAM: PF00893; SUPERFAMILY: SSF103481. (109 aa)    
Predicted Functional Partners:
Dshi_1637
Conserved hypothetical protein; PFAM: PF02588; COG: COG1284 - Uncharacterized conserved protein.
  
  
 0.773
Dshi_1639
Hypothetical protein.
       0.588
Dshi_1640
Hypothetical protein; PROSITE: PS51257.
       0.588
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.505
Dshi_2892
SWISSPROT P0C054: Small heat shock protein ibpA; PFAM: PF00011; PROSITE: PS01031; SUPERFAMILY: SSF49764; COG: COG0071 - Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.
      
 0.478
Dshi_1636
Conserved hypothetical protein; PFAM: pfam01988; COG: COG1814 - Uncharacterized membrane protein.
  
    0.434
Dshi_1634
COG: COG2945 - Predicted hydrolase of the alpha/beta superfamily; PFAM: pfam00561; SUPERFAMILY: SSF53474.
       0.433
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.