STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1662Periplasmic binding protein-like II; COG: COG0715 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; SUPERFAMILY: SSF53850; associated with nitrate transport system. (392 aa)    
Predicted Functional Partners:
Dshi_1661
Transcription antitermination regulatory protein; COG: COG3707 - Response regulator with putative antiterminator output domain; PFAM: PF00072, PF03861; SUPERFAMILY: SSF52172.
 
  
 0.967
Dshi_1664
Putative ABC transporter permease protein; COG: COG0600 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; associated with nitrate transport system.
  
 0.921
Dshi_1665
ABC transporter; TIGRFAM: TIGR01184 nitrate transport ATP-binding subunits C and D; COG: COG1116 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PFAM: PF00005; SMART: SM00382; SUPERFAMILY: SSF52540; Gene3D: G3DSA:3.40.50.300; nitrate transport ATP binding subunits C and D.
     0.902
nasA
SWISSPROT Q06457: Nitrate reductase; COG: COG3383 - Uncharacterized anaerobic dehydrogenase; PFAM: pfam00384, pfam01568, pfam04324, pfam04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.852
nasE
SWISSPROT P42436: assimilatory nitrite reductase [NAD(P)H], small subunit; TIGRFAM: TIGR02378 nitrite reductase [NAD(P)H], small subunit; COG: COG2146 - Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
  
 0.839
nasD
Nitrite reductase [NAD(P)H], large subunit; SWISSPROT P42435: Nitrite reductase [NAD(P)H]; TIGRFAM: TIGR02374 nitrite reductase [NAD(P)H], large subunit; COG: COG1251 - NAD(P)H-nitrite reductase; PFAM: pfam00070, pfam01077, pfam03460, pfam04324; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.833
Dshi_1383
ABC transporter (importer) gene cluster: ATP binding cassette (ABC) domain; part of a heterotetramer.
 
  
 0.819
Dshi_2544
ABC transporter; Swiss-Prot: Q57855-Uncharacterized ABC transporter ATP-binding protein MJ0412 PFAM: ABC transporter related SMART: AAA ATPase KEGG: rsh:Rsph17029_3905 ABC transporter related; ATP-binding protein.
 
  
 0.788
Dshi_1940
ABC transporter ATP binding protein; COG: COG1116 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM00382.
 
  
 0.751
ssuB2
Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
  
 0.747
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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