STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1836Hypothetical protein; PROSITE: PS50817. (369 aa)    
Predicted Functional Partners:
Dshi_3580
KEGG: sil:SPO0035 core-2/I-branching enzyme family protein.
  
    0.777
Dshi_3579
KEGG: sil:SPO0036 hypothetical protein.
  
    0.767
Dshi_1159
Hypothetical protein.
 
   0.757
Dshi_2210
KEGG: sil:SPO0459 hypothetical protein.
 
 
 0.757
Dshi_3581
KEGG: jan:Jann_0222 hypothetical protein.
  
    0.756
Dshi_0761
Conserved hypothetical protein; Conserved in Rhodobacteraceae.
  
     0.738
Dshi_2514
KEGG: sil:SPO1769 hypothetical protein.
  
    0.737
Dshi_1420
Conserved hypothetical protein; Conserved in Rhodobacteraceae.
  
    0.736
Dshi_2338
KEGG: sil:SPO1897 hypothetical protein.
  
     0.728
Dshi_1727
PFAM: PF05036; related to proteins involved in sporulation and cell division.
 
     0.724
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.