STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dshi_1869Putative glutamate synthase; PFAM: PF01493; PIR: PIRSF006519; SWISSPROT O87391: Protein glxC; COG: COG0070 - Glutamate synthase domain 3; fwdC/fmdC family protein. (225 aa)    
Predicted Functional Partners:
Dshi_1868
SWISSPROT O87392: Glutamate synthase large subunit-like protein (glxD); PFAM: PF01645; COG: COG0069 - Glutamate synthase domain 2; Belongs to the glutamate synthase family.
  0.999
Dshi_1870
Putative glutamine amidotransferase; PFAM: PF00310; PROSITE: PS01039; SWISSPROT O87390: Glutamine amidotransferase-like protein glxB; COG: COG0067 - Glutamate synthase domain 1; class II.
 
  0.999
Dshi_2264
TIGRFAM: sarcosine oxidase, alpha subunit family (TIGR01372) Swiss-Prot: O87386 - Sarcosine oxidase subunit alpha PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; alpha subunit family; Belongs to the GcvT family.
 
  
  0.932
gltD
Glutamate synthase, small subunit; NADPH-dependent glutamate synthase beta chain and related oxidoreductases, TIGRFAM: glutamate synthase, small subunit PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: rde:RD1_0063 glutamate synthase, small subunit, involved in nitrogen metabolism PATH: rn00910 and Glutamate metabolism.
  
 
 0.930
Dshi_1362
FAD-dependent pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases, high similarity to NADPH-dependent glutamate synthase beta chain.
  
 
 0.930
Dshi_2265
Swiss-Prot: O87387 - Sarcosine oxidase subunit delta PFAM: Sarcosine oxidase delta subunit heterotetrameric KEGG: sil:SPO1745 sarcosine oxidase, delta subunit family; delta subunit heterotetrameric.
 
 
  0.927
Dshi_2266
Swiss-Prot: O87388 - Sarcosine oxidase subunit beta TIGRFAM: sarcosine oxidase, beta subunit family PFAM: FAD dependent oxidoreductase KEGG: jan:Jann_3445 sarcosine oxidase, beta subunit family.
 
 
  0.926
glnT
SWISSPROT P31592: Glutamine synthetase 3; COG: COG0174 - Glutamine synthetase; PFAM: PF00120; PROSITE: PS00181; SUPERFAMILY: SSF54368.
 
  
 0.916
Dshi_1871
Putative HTH-type transcriptional regulator; PFAM: PF01381, PF07883; PROSITE: PS50943; SUPERFAMILY: SSF51182, SSF47413; COG: COG1396 - Predicted transcriptional regulators.
 
     0.913
Dshi_2263
Swiss-Prot: Q46338 - Sarcosine oxidase subunit gamma TIGR01375# sarcosine oxidase, gamma subunit family, heterotetrameric form; gamma subunit.
    
  0.902
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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