STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1875Putative inner membrane protein; PFAM: PF04224-Protein of unknown function, DUF417; COG: Predicted membrane protein; SWISSPROT P75685: Inner membrane protein ykgB; DUF417. (171 aa)    
Predicted Functional Partners:
Dshi_1874
Putative regulatory protein; PFAM: PF00440; PROSITE: PS50977; SUPERFAMILY: SSF46689, SSF48498; COG: COG1309 - Transcriptional regulator; tetR family.
 
     0.600
Dshi_1876
Putative glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
  
    0.598
Dshi_2281
Swiss-Prot: P38683-Periplasmic protein torT [Precursor] PFAM: periplasmic binding protein/LacI transcriptional regulator TIGR02955: TMAO reductase system periplasmic protein TorT KEGG: rde:RD1_3668 periplasmic protein TorT; putative torT protein.
  
     0.558
Dshi_2503
Hypothetical protein.
  
     0.557
Dshi_2374
Hypothetical protein; PFAM: histidine kinase HAMP region domain protein KEGG: rde:RD1_0232 HAMP domain protein, putative.
  
    0.421
Dshi_1873
SWISSPROT P00105: Cytochrome c-554(548); PFAM: PF00034- cytochrome c; COG: COG2863 - Cytochrome c553.
       0.409
Dshi_2425
Hypothetical protein; PFAM: Hemolysin-type calcium-binding region.
  
     0.408
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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