STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (217 aa)    
Predicted Functional Partners:
tktA
Transketolase 1; SWISSPROT P27302: Transketolase 1; TIGRFAM: TIGR00232 transketolase, bacterial and yeast; COG: COG0021; PFAM: pfam00456, pfam02779, pfam02780; Belongs to the transketolase family.
 
 0.992
pgi
COG: COG0166 - Glucose-6-phosphate isomerase; PFAM: PF00342; SPRINT: PR00662; PROSITE: PS00174, PS00765; SUPERFAMILY: SSF53697; Belongs to the GPI family.
  
 
 0.988
fbaA
Ketose-bisphosphate aldolase; Zinc-dependent, homodimeric enzyme.
  
 
 0.981
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 0.962
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 0.951
glpX
Swiss-Prot: P0A9C9 - Fructose-1,6-bisphosphatase class II glpX TIGRFAM: fructose-1,6-bisphosphatase, class II PFAM: GlpX family protein KEGG: rsq:Rsph17025_0833 fructose-1,6-bisphosphatase, class II.
  
 
 0.946
Dshi_1621
SWISSPROT: 6-phosphofructokinase isozyme 2 (Phosphofructokinase-2) [pfkB]; PROSITE: PS00583; PFAM: PF00294; SUPERFAMILY: SSF53613; Belongs to the carbohydrate kinase PfkB family.
   
 
 0.944
fda
Swiss-Prot: Q07159-Fructose-bisphosphate aldolase class 1 PFAM: fructose-bisphosphate aldolase class-I.
  
 0.935
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
  
 
 0.924
pgm
SWISSPROT P39671: Phosphoglucomutase; COG: COG0033 - Phosphoglucomutase; PFAM: PF02880, PF02879, PF02878, PF00408.
  
 0.914
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.