STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_1946COG4603 - ABC-type uncharacterized transport system, permease component; PFAM: PF02653; Belongs to the binding-protein-dependent transport system permease family. (349 aa)    
Predicted Functional Partners:
Dshi_1945
Putative permease component of branched-chain amino acid transport system; COG: COG1079 - Uncharacterized ABC-type transport system, permease component; PFAM: PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
rbsA4
SWISSPROT P04983: Ribose import ATP-binding protein rbsA; COG: COG3845 - ABC-type uncharacterized transport systems, ATPase components; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM00382.
 
 0.995
Dshi_1948
Putative basic membrane protein; COG: COG1744 - Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; PFAM: PF02608; PROSITE: PS00024.
 
 
 0.992
Dshi_2963
COG: COG1079 - Uncharacterized ABC-type transport system, permease component; PFAM: PF02653-Branched-chain amino acid transport system / permease component; permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
rbsA2
Swiss-Prot: P04983-Ribose import ATP-binding protein rbsA.
 
 0.980
Dshi_2961
ABC transporter ATP binding protein; COG: COG3845 - ABC-type uncharacterized transport systems, ATPase components; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM00382.
 
 0.979
Dshi_2846
PFAM: inner-membrane translocator COG1079: Uncharacterized ABC-type transport system, permease component.
 
0.967
Dshi_2964
Putative basic membrane protein; PFAM: PF02608; SUPERFAMILY: SSF53822.
 
 
 0.962
Dshi_2842
PFAM: basic membrane lipoprotein SSF53822: Periplasmic binding protein-like I superfamily.
 
 
 0.961
Dshi_2844
Integral inner-membrane protein; Swiss-Prot: P0AGI1-Ribose transport system permease protein rbsC PFAM: inner-membrane translocator; similar to ribose transport system permease protein.
  
 
 
0.922
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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