Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dshi_2004Conserved hypothetical protein; PFAM: PF01794. (207 aa)    
Predicted Functional Partners:
Dshi_2003
Hypothetical protein; TIGRFAM: TIGR01409.
 
     0.963
Dshi_3313
KEGG: rsh:Rsph17029_0081 hypothetical protein.
  
     0.528
Dshi_2141
Conserved hypothetical protein; PFAM: PF04391.
  
     0.474
Dshi_1298
Conserved hypothetical protein.
   
    0.434
Dshi_0437
TIGRFAM: F0F1-ATPase subunit, putative PFAM: F0F1-ATPase subunit putative KEGG: net:Neut_2015 F0F1-ATPase subunit, putative; no significant swissprot; low Ref ZP hit to H(+)-transporting ATP synthase, gene 1 from Marinobacter sp. ELB17.
   
    0.433
Dshi_3224
PFAM: integrase family protein KEGG: mpt:Mpe_A3816 site-specific recombinase XerD-like protein; Belongs to the 'phage' integrase family.
  
     0.427
Dshi_0719
Conserved hypothetical protein.
   
    0.425
Dshi_2889
COG: COG3191 - L-aminopeptidase/D-esterase.
   
    0.423
Dshi_2923
Hypothetical protein; PFAM: PF07694; related to 5TMR of 5TMR-LYT.
  
     0.423
Dshi_2002
Hypothetical protein; SUPERFAMILY: SSF69318.
   
    0.413
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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