Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2007Hypothetical protein; PFAM: PF00293; Gene3D: G3DSA:3.90.79.10; SUPERFAMILY: SSF55811; similar to NUDIX hydrolase. (155 aa)    
Predicted Functional Partners:
Dshi_2008
SWISSPROT P0ACL0: Glycerol-3-phosphate regulon repressor; COG: COG1349 - Transcriptional regulators of sugar metabolism; PFAM: PF08220, PF00455; PROSITE: PS00894, PS51000; SMART: SM00420.
  
    0.536
Dshi_2009
TIGRFAM: TIGR01098 phosphonates-binding periplasmic protein; COG: COG3221 - ABC-type phosphate/phosphonate transport system, periplasmic component; SUPERFAMILY: SSF53850.
     
 0.473
Dshi_2006
DK; SWISSPROT O34627: Blue-light photoreceptor; PFAM: PF08447; SMART: SM00086, SM00091; PROSITE: PS50112, PS50113. TD; 1) similar to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); 2) highly conserved LOV consensus region including the photoactive Cys.
  
    0.437
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.421
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.