Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dshi_2139Puative integral membrane protein; SWISSPROT P31125: Probable amino-acid metabolite efflux pump; P0ABT8: Uncharacterized inner membrane transporter yiJE; PFAM: PF00892; SUPERFAMILY: SSF103481; related to multidrug resistance efflux transporter. (297 aa)    
Predicted Functional Partners:
Dshi_2140
Hypothetical protein; PFAM: PF00999; COG: COG0025 - NhaP-type Na+/H+ and K+/H+ antiporters; related to sodium/hydrogen exchanger.
       0.552
Dshi_2767
Conserved hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane.
  
     0.484
Dshi_2694
SSF46626: Cytochrome c superfamily PS51007: CYTC (Cytochrome c family profile).
  
     0.436
Dshi_2141
Conserved hypothetical protein; PFAM: PF04391.
       0.414
Dshi_2621
KEGG: sil:SPO0942 hypothetical protein.
  
     0.404
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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