STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2210KEGG: sil:SPO0459 hypothetical protein. (763 aa)    
Predicted Functional Partners:
Dshi_0807
Hypothetical protein.
 
 
 0.785
Dshi_2172
Conserved hypothetical protein; TIGR01563# phage head-tail adaptor, putative, SPP1 family; IPR013045 Conserved hypothetical protein 1563; TIGRFAM: phage head-tail adaptor, putative; KEGG: sil:SPO2259 head-tail adaptor, putative.
  
 
 0.777
Dshi_2968
Conserved hypothetical protein.
 
   0.767
Dshi_3580
KEGG: sil:SPO0035 core-2/I-branching enzyme family protein.
  
    0.764
Dshi_0678
PFAM: glycosyl transferase family 14; NCBI conserved domains: pfam02485, Branch, Core-2/I-Branching enzyme, pfam03267, DUF266, Domain of unknown function, bad swissprot hit to Xylosyltransferase from Ciona intestinalis; high Ref YP hit to epsK domain protein [Silicibacter pomeroyi DSS-3].
  
    0.759
Dshi_1836
Hypothetical protein; PROSITE: PS50817.
 
 
 0.757
Dshi_3581
KEGG: jan:Jann_0222 hypothetical protein.
  
     0.755
Dshi_2177
TIGRFAM: phage portal protein, HK97 family PFAM: portal protein KEGG: rde:RD1_3033 phage portal protein, putative; HK97 family.
  
   0.754
kpsE
Capsule polysaccharide export; PFAM: lipopolysaccharide biosynthesis protein; NCBI conserved domains: COG3524, KpsE, Capsule polysaccharide export protein; middle swissprot hit to Capsule polysaccharide export inner-membrane protein ctrB from Neisseria meningitidis serogroup A; high Ref ZP hit to Capsule polysaccharide export protein-like [Rhodobacterales bacterium HTCC2150]; permease protein; alternative gene name: ctrB.
  
    0.752
Dshi_1420
Conserved hypothetical protein; Conserved in Rhodobacteraceae.
  
    0.750
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.