STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2220Conserved hypothetical protein; PFAM: protein of unknown function DUF1332 KEGG: sil:SPO1309 hypothetical protein COG4103: Uncharacterized protein conserved in bacteria. (146 aa)    
Predicted Functional Partners:
Dshi_2221
Putative amino acid ABC transporter; COG4598: ABC-type histidine transport system, ATPase component PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1899 amino acid ABC transporter, ATP-binding protein; ATPase subunit.
       0.591
Dshi_1179
Conserved hypothetical protein; Putative outer membrane protein.
  
     0.563
Dshi_2219
PFAM: Cold-shock protein DNA-binding SMART: Cold shock protein KEGG: rde:RD1_1402 cold shock protein CspA-related protein, putative.
  
    0.563
hisE
Swiss-Prot: P06989-Phosphoribosyl-ATP pyrophosphatase PFAM: phosphoribosyl-ATP pyrophosphohydrolase.
  
    0.561
Dshi_2835
Conserved hypothetical protein; PFAM: Rhomboid family protein KEGG: sit:TM1040_0444 rhomboid-like protein COG0705: Uncharacterized membrane protein (homolog of Drosophila rhomboid); related to rhomboid family protein.
  
     0.457
Dshi_0784
RNA-binding S4.
 
    0.447
Dshi_2223
Swiss-Prot entry: P52094 Histidine transport system permease protein hisQ COG4215: ABC-type arginine transport system, permease component KEGG: sit:TM1040_1713 binding-protein-dependent transport systems inner membrane component.
       0.431
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.430
Dshi_2222
PFAM: extracellular solute-binding protein family 3 COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain SMART: ionotropic glutamate receptor KEGG: rde:RD1_1898 periplasmic binding protein, putative; family 3.
       0.425
Dshi_1856
PFAM: Protein of unknown function (DUF498/DUF598); COG: COG3737.
  
    0.423
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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