STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dshi_2221Putative amino acid ABC transporter; COG4598: ABC-type histidine transport system, ATPase component PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1899 amino acid ABC transporter, ATP-binding protein; ATPase subunit. (259 aa)    
Predicted Functional Partners:
Dshi_2223
Swiss-Prot entry: P52094 Histidine transport system permease protein hisQ COG4215: ABC-type arginine transport system, permease component KEGG: sit:TM1040_1713 binding-protein-dependent transport systems inner membrane component.
 
  
 0.971
Dshi_2222
PFAM: extracellular solute-binding protein family 3 COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain SMART: ionotropic glutamate receptor KEGG: rde:RD1_1898 periplasmic binding protein, putative; family 3.
  
 0.940
Dshi_2224
Putative polar amino acid ABC transporter; Swiss-Prot entry: P0A2I7 Histidine transport system permease protein hisM TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: sit:TM1040_1714 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; inner membrane subunit.
  
 0.912
Dshi_3490
ATPase; PFAM: ABC transporter related SMART: AAA ATPase KEGG: sil:SPO0027 ABC transporter, transmembrane ATP-binding protein.
 
     
0.892
Dshi_3548
ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_4278 ABC transporter related.
 
     
0.889
Dshi_2596
PFAM: ABC transporter related SMART: AAA ATPase Swiss-Prot: P33593-Nickel import ATP-binding protein nikD COG0444:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; ATPase component.
 
   
0.834
Dshi_0139
TIGRFAM: type I secretion system ATPase PFAM: ABC transporter related contains:pfam00005 pfam00664.
 
     
0.794
modB
Molybdenum transport system permease protein modB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.781
bztC
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_1446 amino acid ABC transporter, permease protein, high swissprot to Glutamate/glutamine/aspartate/asparagine transport system permease from Rhodobacter capsulatus.
 
  
 0.771
Dshi_2501
ABC transporter; Swiss-Prot: P18770-Cyclolysin secretion/processing ATP-binding protein cyaB; P26760-Toxin RTX-I translocation ATP-binding protein PFAM: ABC transporter transmembrane region; ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1124 toxin secretion ABC transporter, ATP-binding component, putative; colocated with secretion protein (HylD family); associated with toxin excretion.
 
    
0.761
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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