STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2234TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular PFAM: PHB de-polymerase domain protein KEGG: sil:SPO1291 polyhydroxyalkanoate depolymerase, intracellular; intracellular. (425 aa)    
Predicted Functional Partners:
phbC
Swiss-Prot: P50176 - Poly-beta-hydroxybutyrate polymerase TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I PFAM: Poly-beta-hydroxybutyrate polymerase domain protein KEGG: rsh:Rsph17029_2036 poly(R)-hydroxyalkanoic acid synthase, class I.
 
 
 0.993
phaC
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein; high Ref YP hit to poly(3-hydroxyalkanoate) polymerase family protein from Silicibacter pomeroyi DSS-3 and high swissprot hit to Poly(3-hydroxyalkanoate) polymerase (PHA polymerase) from Methylobacterium extorquens; NCBI conserved domains: phaC.
 
  
 0.980
Dshi_2230
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein KEGG: rsq:Rsph17025_0856 polyhydroxyalkonate synthesis repressor, PhaR; PhaR.
 
  
 0.893
Dshi_2232
NCBI: YP_682186 - hypothetical protein RD1_1889.
 
  
 0.821
Dshi_2231
NCBI: YP_001043910 - hypothetical protein Rsph17029_2035.
 
  
 0.787
clpX
ATP-dependent Clp protease; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.701
Dshi_2267
Hypothetical protein; IPR002035: von Willebrand factor, type A.
  
     0.536
Dshi_2790
Swiss-Prot: Q4UL59-Uncharacterized RNA pseudouridine synthase RF_0863 TIGR00093: pseudouridine synthase family COG1187:16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.
  
     0.531
Dshi_1500
Outer membrane chaperone Skp; Skp (OmpH) has been characterised as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
  
     0.528
fur
Fur family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes; Fur family.
   
  
 0.479
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.