STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2344Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protein Swiss-Prot: P09835-Sensor protein uhpB; colocated with two component transcriptional regulator. (480 aa)    
Predicted Functional Partners:
Dshi_2345
Two component transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Swiss-Prot: P0AF28-Nitrate/nitrite response regulator protein narL; colocated with histidine kinase; LuxR family.
     0.954
Dshi_2342
Hypothetical protein; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component COG4665: TRAP-type mannitol/chloroaromatic compound transport system, small permease component; associated with TRAP transporters, DctQ component.
 
     0.797
Dshi_2341
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit Swiss-Prot: P44483-Putative TRAP transporter large permease protein HI0050 TIGR00786: TRAP transporter, DctM subunit KEGG: sil:SPO2571 TRAP transporter, DctM subunit, putative; DctM subunit.
 
     0.696
Dshi_2343
Hypothetical protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
     0.585
Dshi_2565
Response regulator protein; Swiss-Prot: O32197-Sensory transduction protein PFAM: regulatory protein LuxR; response regulator receiver KEGG: sen:SACE_5003 two component transcriptional regulator, LuxR family; colocated with histidine kinase.
 
    0.557
Dshi_0725
Conserved hypothetical protein.
  
     0.497
Dshi_2622
KEGG: sil:SPO0941 hypothetical protein.
  
    0.495
Dshi_3093
Hypothetical protein.
  
     0.476
luxR2
Two component transcriptional regulator; Blast hits, no swissprot, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, PFAM: regulatory protein LuxR; response regulator receiver; LuxR family.
 
     0.449
Dshi_2270
KEGG: sil:SPO1739 hypothetical protein.
  
    0.435
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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