STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (349 aa)    
Predicted Functional Partners:
adh
TIGRFAM: alanine dehydrogenase PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; alanine dehydrogenase/PNT domain protein KEGG: sit:TM1040_3628 alanine dehydrogenase; high swissprot; Belongs to the AlaDH/PNT family.
  
 
 0.978
ddl
D-alanine--D-alanine ligase; Cell wall formation.
 
 
 0.972
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 0.972
dat
TIGR01121D-amino acid aminotransferase PFAM: aminotransferase class IV KEGG: jan:Jann_0363 aminotransferase, class IV; good blast hit; DAAT; D-amino acid transaminase; D-amino acid aminotransferase; D-aspartate aminotransferase.
  
 
 0.952
nadD
Conserved hypothetical protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.850
Dshi_2379
Conserved hypothetical protein; Swiss-Prot: P64606-UPF0393 inner membrane protein yrbE TIGR00056: conserved hypothetical integral membrane protein PFAM: protein of unknown function DUF140 COG0767: ABC-type transport system involved in resistance to organic solvents, permease component; similar to UPF0393 inner membrane protein yrbE.
  
    0.821
Dshi_2380
ABC transporter; Swiss-Prot: P63386-Uncharacterized ABC transporter ATP-binding protein yrbF COG1127: ABC-type transport system involved in resistance to organic solvents, ATPase component.
       0.817
sgaA2
Serine--glyoxylate transaminase; PLP-dependent enzyme, Reaction: L-serine + glyoxylate <=> 3-hydroxypyruvate + glycine.
  
 
 0.806
Dshi_2090
Putative serine--glyoxylate aminotransferase; COG: COG0075 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: PF00266.
    
 0.805
Dshi_2489
Swiss-Prot: O08374- Serine--glyoxylate aminotransferase (Inferred from homology) PFAM: aminotransferase class V KEGG: sme:SMa2139 probable SgaA serine-glyoxylate aminotransferase (SgaT).
    
 0.805
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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