STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2481Hypothetical protein. (40 aa)    
Predicted Functional Partners:
Dshi_2480
PFAM: short-chain dehydrogenase/reductase SDR COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
    0.549
Dshi_2530
Hypothetical protein.
   
    0.443
Dshi_2482
Hypothetical protein; TIGRFAM / PFAM: Ethyl tert-butyl ether degradation EthD; similar to EthD protein.
       0.432
atpC2
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
    0.430
Dshi_2479
Transcriptional regulator; Swiss-Prot:P30864-Uncharacterized HTH-type transcriptional regulator yafC PFAM: regulatory protein LysR; LysR substrate-binding; LysR family.
       0.400
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.