STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2627Swiss-Prot: P0ACY1-Protein ydjA PFAM: nitroreductase KEGG: rsq:Rsph17025_0371 nitroreductase; related to nitroreductase. (216 aa)    
Predicted Functional Partners:
Dshi_2628
Conserved hypothetical protein; PFAM: Protein of unknown function (DUF540).
  
    0.876
Dshi_2626
Swiss-Prot: P55682-Uncharacterized transporter y4wD PFAM: major facilitator superfamily MFS_1.
     
 0.779
Dshi_2625
KEGG: sil:SPO0938 hypothetical protein.
       0.625
Dshi_0639
PFAM: ABC-2 type transporter, NCBI conserved domains: COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component; good swissprot hit to Inner membrane transport permease yadH from Escherichia coli K12; high Ref ZP hit to ABC transporter, permease protein [Roseobacter sp. SK209-2-6]; permease protein.
  
  
 0.563
Dshi_2615
ABC-2 type transporter; Swiss-Prot: P0AFN6-Inner membrane transport permease yadH PFAM: ABC-2 type transporter KEGG: sil:SPO0957 ABC transporter, permease protein COG1682 : ABC-type polysaccharide/polyol phosphate export systems, permease component; permease component.
  
  
 0.563
Dshi_2668
PFAM: ABC-2 type transporter Swiss-Prot: P0AFP9-Inner membrane transport permease ybhR KEGG: sil:SPO1510 efflux ABC transporter, permease protein; permease component.
  
  
 0.563
cbiG
TIGRFAM: precorrin-3B C17-methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein KEGG: mag:amb0298 precorrin-3B methylase.
     
 0.541
Dshi_2624
KEGG: rde:RD1_1657 hypothetical protein.
  
    0.528
cobL
Decarboxylating precorrin-6Y C(5,15)-methyltransferase; KEGG: ava:Ava_3558 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
  
 0.527
fadH
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: sit:TM1040_2458 NADH:flavin oxidoreductase/NADH oxidase, high swissprot to 2,4-dienoyl-CoA reductase [NADPH] from Escherichia coli K12.
  
  
 0.504
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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