STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2698Swiss-Prot: P0A9S7-High-affinity branched-chain amino acid transport ATP-binding protein livG PFAM: ABC transporter related SMART: AAA ATPase COG4674: Uncharacterized ABC-type transport system, ATPase component. (245 aa)    
Predicted Functional Partners:
Dshi_2697
Swiss-Prot: P22729-High-affinity branched-chain amino acid transport system permease protein livM PFAM: inner-membrane translocator; permease protein.
 
 0.999
Dshi_2696
Inner-membrane translocator; Swiss-Prot: P0AEX7-High-affinity branched-chain amino acid transport system permease protein livH PFAM: inner-membrane translocator SMART: PBS lyase HEAT domain protein repeat-containing protein.
 
 0.987
Dshi_2695
Swiss-Prot: P27017-Aliphatic amidase expression-regulating protein amiC COG0683: ABC-type branched-chain amino acid transport systems, periplasmic component SSF53822: Periplasmic binding protein-like I superfamily.
 
  
 0.983
Dshi_2699
Swiss-Prot: P22731-High-affinity branched-chain amino acid transport ATP-binding protein livF PFAM: ABC transporter related SMART: AAA ATPase COG0410: ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
0.968
Dshi_0860
Inner-membrane translocator; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer; Belongs to the binding-protein-dependent transport system permease family.
  
 0.950
Dshi_1402
Inner-membrane translocator; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer; Belongs to the binding-protein-dependent transport system permease family.
  
 0.939
livM
PFAM: inner-membrane translocator KEGG: sil:SPO3292 branched-chain amino acid ABC transporter, permease protein; middle swissprot hit to High-affinity branched-chain amino acid transport system permease protein livM from Salmonella typhimurium and high Ref YP hit to inner-membrane translocator from Jannaschia sp. CCS1; NCBI conserved domains:livM; gene arrangement with Dshi_0375 to Dshi_0381.
  
 0.921
Dshi_0858
ABC transporter (importer) gene cluster: 2nd ATP binding cassette (ABC) domain; part of a heterotetramer.
  
0.908
livF2
SWISSPROT P22731: High-affinity branched-chain amino acid transport ATP-binding protein livF; PFAM: PF00005; PROSITE: PS50893; SMART: SM00382; COG: COG0410 -ABC-type branched-chain amino acid transport systems, ATPase component.
  
0.906
livF1
High-affinity branched-chain amino acid transport ATP-binding protein livF; PFAM: ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_4003 ABC transporter related, good swissprot hit to High-affinity branched-chain amino acid transport ATP-binding protein livF from Salmonella typhimurium and high Ref ZP hit to ABC transporter related protein from Roseobacter sp. CCS2, NCBI conserved domains: livF; gene cluster from Dshi_0375 to Dshi_0381.
  
0.895
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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