STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2800Swiss-Prot: P00082-Cytochrome c2 PFAM: cytochrome c class I. (235 aa)    
Predicted Functional Partners:
fccB
Swiss-Prot: Q06530- Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [Precursor] PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding.
 
 
 0.970
Dshi_2801
Swiss-Prot: P00081-Cytochrome c2 PFAM: cytochrome c class I.
 
  
0.930
Dshi_3211
KEGG: mpt:Mpe_A0912 putative sulfite oxidase cytochrome subunit.
 
 
 0.928
petA
Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.925
petC
PFAM: cytochrome c1 KEGG: rde:RD1_0565 cytochrome c1.
 
 0.924
fixO
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II PFAM: cytochrome C oxidase mono-heme subunit/FixO; NCBI conserved domains: fixO; no significant swissprot, high Ref ZP hit to cytochrome c oxidase, cbb3-type, subunit II [Roseovarius sp. TM1035]; cbb3-type, subunit II.
  
 
 0.920
fixN
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I PFAM: cytochrome c oxidase subunit I; NCBI conserved domains: cd01661, cbb3_Oxidase_I; high swissprot hit to Cytochrome c oxidase subunit 1 homolog, bacteroid from Sinorhizobium meliloti; high Ref ZP hit to cytochrome c oxidase, cbb3-type, subunit I [Roseovarius sp. TM1035]; cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.912
Dshi_2802
Oxidoreductase; Swiss-Prot: PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; molybdopterin binding.
 
 
 0.907
ctaD
Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 0.819
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.815
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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