STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2810Hypothetical protein. (135 aa)    
Predicted Functional Partners:
Dshi_2808
SSF52833: Thioredoxin-like superfamily COG2143: Thioredoxin-related protein Swiss-Prot: Q16A50-Thioredoxin SoxW [predicted].
 
    0.926
Dshi_2813
Conserved hypothetical protein; PFAM: protein of unknown function DUF395 YeeE/YedE.
 
    0.923
Dshi_2807
PFAM: cytochrome c SSF46626 / PS51007 / G3DSA:1.10.760.10: Cytochrome c, monohaem Swiss-Prot: A3W521- Monoheme cytochrome c SoxX [predicted]; monohaem.
 
   
 0.890
Dshi_2806
PIRSF010312: sulfur oxidation protein SoxY [Validated] Swiss-Prot: A3X8I0-Sulfur oxidation protein SoxY [predicted]; soxY.
 
   
 0.872
Dshi_2805
PFAM: Sulphur oxidation protein SoxZ Swiss-Prot: Q939U2- SoxZ [predicted]; soxZ.
 
     0.865
soxA1
Swiss-Prot: Q939U1-Diheme cytochrome c GENE3D / SSF46626: Cytochrome c, monohaem PS51008: Multihaem cytochrome.
 
     0.840
Dshi_2812
PFAM: regulatory protein ArsR; ArsR family.
 
    0.837
Dshi_2803
Putative 5'-nucleotidase; PFAM: metallophosphoesterase; 5-Nucleotidase domain protein Swiss-Prot:P07024-Protein ushA [Precursor] COG0737: 5-nucleotidase/2,3-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
 
   
 0.822
Dshi_2811
Conserved hypothetical protein; PFAM: protein of unknown function DUF336.
 
    0.817
Dshi_2801
Swiss-Prot: P00081-Cytochrome c2 PFAM: cytochrome c class I.
 
     0.816
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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