STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2812PFAM: regulatory protein ArsR; ArsR family. (111 aa)    
Predicted Functional Partners:
Dshi_2810
Hypothetical protein.
 
    0.837
Dshi_2813
Conserved hypothetical protein; PFAM: protein of unknown function DUF395 YeeE/YedE.
 
    0.786
Dshi_2811
Conserved hypothetical protein; PFAM: protein of unknown function DUF336.
  
    0.724
Dshi_2808
SSF52833: Thioredoxin-like superfamily COG2143: Thioredoxin-related protein Swiss-Prot: Q16A50-Thioredoxin SoxW [predicted].
 
    0.689
Dshi_2809
PFAM: cytochrome c biogenesis protein transmembrane region COG0785: Cytochrome c biogenesis protein; transmembrane region.
 
  
 0.605
Dshi_1259
Heavy metal translocating P-type ATPase.
  
  
 0.594
Dshi_2226
Glutamine synthetase family protein; Swiss-Prot: P78061-Gamma-glutamylputrescine synthetase / Q9HNI2-Glutamine synthetase PFAM: glutamine synthetase catalytic region KEGG: sil:SPO1300 glutamine synthetase family protein.
  
    0.536
Dshi_2517
Hypothetical protein; Swiss-Prot: Q8UAA9-Beta-lactamase hydrolase-like protein PFAM: beta-lactamase domain protein KEGG: rde:RD1_0785 metallo-beta-lactamase family protein; related to beta-lactamase hydrolase-like protein.
 
  
 0.434
fixI
Nitrogen fixation protein fixI; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; high swissprot hit to Nitrogen fixation protein fixI from Sinorhizobium meliloti; high Ref ZP hit to copper-t; E1-E2 type cation ATPase fixI.
  
  
 0.403
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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