STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2827Conserved hypothetical protein; Swiss-Prot: P0A8X2-Protein yceI [Precursor] PFAM: YceI family protein COG2353: Uncharacterized conserved protein; similar to protein yceI [Precursor]; Belongs to the UPF0312 family. (187 aa)    
Predicted Functional Partners:
Dshi_2826
KEGG: rde:RD1_2519 hypothetical protein COG4544: Uncharacterized conserved protein.
  
    0.650
Dshi_2828
Conserved hypothetical protein; Swiss-Prot: TIGRFAM: Mg chelatase, subunit ChlI PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5 SMART: AAA ATPase; related to Mg chelatase.
  
    0.538
Dshi_2825
Hypothetical protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding COG1250: 3-hydroxyacyl-CoA dehydrogenase; related to 3-hydroxyacyl-CoA dehydrogenase.
       0.530
Dshi_2495
Swiss-Prot: P75925-Cytochrome b561 homolog 2 PFAM: cytochrome B561.
 
  
 0.505
Dshi_2824
Conserved hypothetical protein.
  
    0.431
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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