STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_2845Conserved hypothetical protein; PFAM: Lysine exporter protein (LYSE/YGGA) Swiss-Prot: P75693-Uncharacterized membrane protein yahN; related to LysE type translocator. (209 aa)    
Predicted Functional Partners:
Dshi_2846
PFAM: inner-membrane translocator COG1079: Uncharacterized ABC-type transport system, permease component.
  
    0.790
rbsA2
Swiss-Prot: P04983-Ribose import ATP-binding protein rbsA.
  
    0.775
Dshi_2844
Integral inner-membrane protein; Swiss-Prot: P0AGI1-Ribose transport system permease protein rbsC PFAM: inner-membrane translocator; similar to ribose transport system permease protein.
  
    0.775
Dshi_2842
PFAM: basic membrane lipoprotein SSF53822: Periplasmic binding protein-like I superfamily.
  
    0.700
rhtB
Homoserine/homoserine lactone efflux protein; PFAM: Lysine exporter protein (LYSE/YGGA) KEGG: sit:TM1040_0069 lysine exporter protein (LysE/YggA), good blast hit to R. denitrificans.
  
    0.619
Dshi_2848
TIGR02186# conserved hypothetical protein.
  
    0.599
Dshi_2847
Conserved hypothetical protein; Swiss-Prot: PFAM: protein of unknown function DUF81 KEGG: sil:SPO0375 membrane protein.
       0.596
Dshi_2841
Putative ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.431
Dshi_2840
PFAM: peptidase M22 glycoprotease; glycoprotease.
  
    0.422
Dshi_2839
Conserved hypothetical protein; PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU Swiss-Prot: P33179-Nitrogen fixation protein nifU [Fragment] (inferred from homology); related to nitrogen fixation protein.
       0.416
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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