STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
pdhRPyruvate dehydrogenase complex repressor; PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: rde:RD1_1326 pdhR; pyruvate dehydrogenase complex repressor. (255 aa)    
Predicted Functional Partners:
Dshi_1044
Transcriptional regulator; N-terminal HTH region, C-terminal FCD effector binding domain; GntR family.
  
  
 0.673
Dshi_3025
PFAM: OmpA/MotB domain protein; 17 kDa surface antigen KEGG: rsq:Rsph17025_0195 OmpA/MotB domain protein.
  
    0.621
Dshi_1984
SWISSPROT P76114: Uncharacterized HTH-type transcriptional regulator yncC; PFAM: PF07729, PF00392; Gene3D: G3DSA:1.10.10.10; COG: COG1802 - Transcriptional regulators.
  
  
 0.570
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
  
 0.567
pykA
KEGG: rsp:RSP_1766 pyruvate kinase TIGRFAM: pyruvate kinase PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; high swissprot; Belongs to the pyruvate kinase family.
  
  
 0.562
dgoK
2-dehydro-3-deoxygalactonokinase; Catalyses the second step in D-galactonate degradation.
  
  
 0.550
xylB1
Xylulokinase; Reaction: ATP + D-xylulose = ADP + D-xylulose 5-phosphate.
  
  
 0.539
xylB2
SWISSPROT P09099: Xylose kinase; PFAM: PF00370, PF02782; TIGRFAM: TIGR01312 D-xylulose kinase; COG: COG1070 - Sugar (pentulose and hexulose) kinases.
     
 0.535
exaA
Swiss-Prot: Q9Z4J7-Quinoprotein ethanol dehydrogenase [Precursor] PFAM: Pyrrolo-quinoline quinone SSF50998: Quinonprotein alcohol dehydrogenase-like KEGG: sil:SPO1508 quinoprotein ethanol dehydrogenase.
   
  
 0.513
rpoH1
SWISSPROT P0AGB3: RNA polymerase sigma-32 factor; COG: COG0568 - DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); TIGRFAM: TIGR02392 alternative sigma factor RpoH; TIGR02937 RNA polymerase sigma factor, sigma-70 family; PFAM: PF04542, PF04545; PRINTS: PR00046; Gene3D: G3DSA:1.10.10.10; SUPERFAMILY: SSF88946, SSF88659.
      
 0.513
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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