STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_3109KEGG: rde:RD1_0522 hypothetical protein. (649 aa)    
Predicted Functional Partners:
aslA
Arylsulfatase precursor; PFAM: sulfatase KEGG: rde:RD1_0531 arylsulfatase; Aryl-sulfate sulphohydrolase; AS.
 
   
 0.856
Dshi_3112
KEGG: rde:RD1_0530 nonspecific acid phosphatase.
 
    0.818
Dshi_3118
KEGG: rde:RD1_0524 hypothetical protein.
 
    0.797
Dshi_0936
Sulfatase; Exported or inner-membrane bound, catalyzes hydrolization of sulfate from organic compounds.
 
   
 0.768
Dshi_3110
PFAM: cyclic nucleotide-binding KEGG: rsq:Rsph17025_3179 hypothetical protein.
 
     0.766
Dshi_1878
Hypothetical protein; SUPERFAMILY: SSF56784.
  
     0.756
Dshi_3117
KEGG: rde:RD1_0525 hypothetical protein.
 
     0.715
Dshi_3115
KEGG: rde:RD1_0527 hypothetical protein.
 
     0.713
Dshi_0509
Conserved hypothetical protein; No significant swissprot, no conserved domains (except for one signalpep.); unsure GC frame plot; good Ref YP hit to hypothetical protein Spro_3113 [Serratia proteamaculans 568].
  
  
 0.674
Dshi_0937
Hypothetical protein.
  
  
 0.663
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.