STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_3189Transcriptional regulator; PFAM: cyclic nucleotide-binding KEGG: sil:SPOA0323 cyclic nucleotide-binding protein; similar to DnrD. (236 aa)    
Predicted Functional Partners:
Dshi_3270
Conserved hypothetical protein.
  
   
 0.826
nosL
Nitrous oxide reductase accessory protein NosL; PFAM: NosL family protein KEGG: pde:Pden_4215 NosL family protein.
 
   
 0.751
fixK
PFAM: cyclic nucleotide-binding; regulatory protein Crp, NCBI conserved domains: PRK09391, fixK, transcriptional regulator FixK; high swissprot hit to Transcriptional activator protein fnrL from Rhodobacter sphaeroides 2.4.1; high Ref ZP hit to transcriptional activator protein FnrL [Roseovarius sp. 217]; Crp/Fnr family; alternative gene name: fnrL.
  
   
 0.711
Dshi_2521
Transcriptional regulator; Swiss-Prot: P0ACJ8-Catabolite gene activator crp PFAM: cyclic nucleotide-binding SMART: regulatory protein Crp KEGG: sil:SPO1615 cyclic nucleotide-binding protein; Crp/Fnr family.
  
   
 0.570
hemA3
KEGG: rde:RD1_3778 5-aminolevulinic acid synthase TIGRFAM: 5-aminolevulinic acid synthase PFAM: aminotransferase class I and II; Delta-ALA synthetase; Delta-aminolevulinate synthase; 5-aminolevulinic acid synthase.
     
 0.563
nosR3
KEGG:rde:RD1_1546 nosR; nitrous-oxide reductase regulatory protein NosR PFAM: FMN-binding domain protein.
 
   
 0.558
Dshi_0447
PFAM: cyclic nucleotide-binding SMART: regulatory protein Crp; low swissprot hit to Transcriptional activatory protein aadR from Rhodopseudomonas palustris and middle Ref ZP hit to transcriptional regulator, Crp/Fnr family protein from Roseobacter sp. AzwK-3b; Crp/Fnr family.
  
   
 0.554
nosZ
KEGG:rde:RD1_1547 nosZ; nitrous-ide reductase.
 
   
 0.522
nosF
PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1549 nosF; copper transport ATP-binding protein NosF.
 
  
 0.501
Dshi_2528
Putative transcriptional regulator; PFAM: Bacterial regulatory proteins, crp family KEGG: rru:Rru_A1245 transcriptional regulator, Crp/Fnr family; Crp/Fnr family.
      
 0.482
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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