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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allAUreidoglycolatehydrolase; PFAM: Ureidoglycolate hydrolase KEGG: rsh:Rsph17029_0204 ureidoglycolate hydrolase. (164 aa)    
Predicted Functional Partners:
Dshi_3200
PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein KEGG: jan:Jann_2601 protein of unknown function DUF861, cupin_3.
 
 
  0.983
Dshi_3204
PFAM: polysaccharide deacetylase; pfam09349, OHCU_decarbox, OHCU decarboxylase. KEGG: jan:Jann_2608 polysaccharide deacetylase.
 
    0.973
ureB
Swiss-Prot: Q28RJ8-Urease subunit beta ureB TIGRFAM: urease, beta subunit PFAM: Urease beta subunit; Belongs to the urease beta subunit family.
  
 
 0.904
ureA
Swiss-Prot: Q9RFF5-Urease subunit gamma ureA TIGRFAM: urease, gamma subunit PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.
  
 
  0.903
ureC
Swiss-Prot: Q28RJ3-Urease subunit alpha ureC TIGRFAM: urease, alpha subunit PFAM: amidohydrolase; Urease alpha-subunit domain protein; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
  
 
  0.902
Dshi_3207
PFAM: protein of unknown function DUF989 KEGG: rde:RD1_4148 hypothetical protein.
 
    0.855
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
 
 0.848
Dshi_2090
Putative serine--glyoxylate aminotransferase; COG: COG0075 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: PF00266.
  
  
  0.838
sgaA1
Swissprot: Q56YA5 Serine--glyoxylate aminotransferase PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase KEGG: jan:Jann_1162 aminotransferase, class V; Serine--pyruvate aminotransferase; AGT; Alanine--glyoxylate aminotransferase.
  
  
  0.831
sgaA2
Serine--glyoxylate transaminase; PLP-dependent enzyme, Reaction: L-serine + glyoxylate <=> 3-hydroxypyruvate + glycine.
  
  
  0.829
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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