STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_3242PFAM: protein of unknown function DUF404; protein of unknown function DUF407 KEGG: sit:TM1040_2114 protein of unknown function DUF404; DUF407. (475 aa)    
Predicted Functional Partners:
Dshi_3243
PFAM: protein of unknown function DUF403 KEGG: jan:Jann_2677 protein of unknown function DUF403.
  
 0.993
Dshi_3244
Putative transglutaminase-like superfamily protein; PFAM: transglutaminase domain protein; transglutaminase domain protein KEGG: hne:HNE_2679 transglutaminase family protein.
 
  
 0.965
Dshi_3245
Putative proteasome-type protease; PFAM: 20S proteasome A and B subunits KEGG: rde:RD1_4009 proteasome-type protease, putative.
  
 0.933
Dshi_1749
Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
 
    0.908
Dshi_0855
Transglutaminase domain protein; Belongs to class of conserved hypothetical proteins with N-terminal transglutaminse domain, catalytic activity not proofed.
 
  
 0.850
Dshi_1686
Hypothetical protein; COG: COG1305 - Transglutaminase-like enzymes, putative cysteine proteases; PFAM: pfam01841; SMART: SM00460; SUPERFAMILY: SSF54001; transglutaminase-like.
 
  
 0.823
Dshi_0857
Transglutaminase domain protein; Belongs to clas of conserved hypothetical proteins with N-terminal transglutaminse domain, catalytic activity not proofed.
  
 0.724
Dshi_0856
Protein of unknown function DUF404; Contains DUF404, 407, 403 domains.
 
  
0.723
lpcC
Lipopolysaccharide core biosynthesis mannosyltransferase; PFAM: glycosyl transferase group 1 KEGG: pde:Pden_2773 glycosyl transferase, group 1;rde:RD1_3309 lpcC;lipopolysaccharide core biosynthesis mannosyltransferase.
       0.503
Dshi_3232
KEGG: sil:SPO3807 hypothetical protein.
   
    0.424
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.