STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dshi_3259KEGG: rsh:Rsph17029_2977 hypothetical protein. (621 aa)    
Predicted Functional Partners:
fliH
COG: FliH, Flagellar biosynthesis/type III secretory pathway protein PRK: fliH, flagellar assembly protein H KEGG: rsh:Rsph17029_2971 putative flagellar biosynthesis/type III secretory pathway protein.
 
    0.991
Dshi_3261
KEGG: rsh:Rsph17029_2975 hypothetical protein.
 
  
 0.989
motA
PRK: flagellar motor protein MotA. KEGG: sil:SPO0203 chemotaxis protein MotA; motility protein A.
 
  
 0.982
fliL2
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.981
Dshi_3262
KEGG: rde:RD1_0271 hypothetical protein.
 
    0.980
fliN
Swissprot: Q03593 Flagellar motor switch protein fliN COG: Flagellar motor switch/type III secretory pathway protein.
 
    0.964
fliL1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.958
flgH
Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
    0.953
fliR
Flagellar biosynthesis protein FliR; PFAM: type III secretion system inner membrane R protein KEGG: jan:Jann_4187 flagellar biosynthetic protein FliR.
 
    0.936
flgL
Flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 0.935
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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