STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puhEPuhE protein; KEGG: rde:RD1_0128 REFSEQ: ref|YP_680549.1 PuhE Protein PMID: 17098896. (265 aa)    
Predicted Functional Partners:
acsF
Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.
 
  
 0.997
puhB
Putative photosynthetic complex assembly protein; KEGG: rde:RD1_0132 possible photosynthetic co REFSEQ: ref|ZP_01879036.1 putative photosynthetic complex assembly protein PMID: 17098896.
 
  
 0.989
Dshi_3543
KEGG: rde:RD1_0130 hypothetical protein.
 
    0.989
puhC
PuhC protein; KEGG: rde:RD1_0131 REFSEQ: ref|YP_680552.1 PuhC Protein PMID: 17098896; 17098896.
 
  
 0.988
lhaA
PFAM: PUCC protein; major facilitator superfamily MFS_1 KEGG: rde:RD1_0134 LhaA protein PMID: 17098896.
 
  
 0.986
bchM
TIGRFAM: magnesium protoporphyrin O-methyltransferase PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein; Methyltransferase type 11; Methyltransferase type 12 KEGG: rde:RD1_0135 magnesium protoporphyrin IX methyltransferase PMID: 17098896; Magnesium-protoporphyrin IX methyltransferase.
 
    0.974
puhA
TIGRFAM: photosynthetic reaction center H subunit PFAM: PRC-barrel domain protein; Photosynthetic reaction centre H subunit KEGG: rde:RD1_0133 photosynthetic reaction center H subunit PMID: 17098896.
 
    0.970
bchN
Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.960
bchB
Light-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.959
bchG
TIGRFAM: bacteriochlorophyll/chlorophyll synthetase PFAM: UbiA prenyltransferase KEGG: jan:Jann_0165 bacteriochlorophyll/chlorophyll synthetase PMID: 17098896.
 
    0.954
Your Current Organism:
Dinoroseobacter shibae
NCBI taxonomy Id: 398580
Other names: D. shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DFL 12, Dinoroseobacter shibae DFL 12 = DSM 16493, Dinoroseobacter shibae DSM 16493, Dinoroseobacter shibae DSM 16493 = DFL 12, Jannaschia sp. DFL-12
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