STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGAM01_v202635Ubiquitin-40S ribosomal protein S27a. (153 aa)    
Predicted Functional Partners:
TGAM01_v209687
40S ribosomal protein S17.
   
 0.995
TGAM01_v203785
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 0.995
TGAM01_v211000
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 0.994
TGAM01_v210321
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 0.994
TGAM01_v206399
60S ribosomal protein L14-B.
   
 0.994
TGAM01_v200837
40S ribosomal protein S20.
   
 0.994
TGAM01_v208266
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.994
TGAM01_v205394
S10_plectin domain-containing protein.
   
 0.994
TGAM01_v201501
Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family.
   
 0.994
TGAM01_v201576
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.994
Your Current Organism:
Trichoderma gamsii
NCBI taxonomy Id: 398673
Other names: BPI 872183, C.P.K. 2074, CBS 120075, CPK 2074, FMR 12636, G.J.S. 06-09, GJS 06-09, T. gamsii, Trichoderma gamsii Samuels & Druzhinina, 2006, Trichoderma sp. GJS 04-09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.