STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGAM01_v205716Uncharacterized protein. (465 aa)    
Predicted Functional Partners:
TGAM01_v200462
Eukaryotic translation initiation factor 4E-2; Belongs to the eukaryotic initiation factor 4E family.
   
 0.807
TGAM01_v202515
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
  
0.797
TGAM01_v201054
RRM domain-containing protein.
    
  0.768
TGAM01_v209366
ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family.
   
 0.746
TGAM01_v200562
Uncharacterized protein.
    
 0.736
TGAM01_v206348
Nuclear cap-binding protein subunit 2.
    
 0.732
TGAM01_v207613
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.722
TGAM01_v205582
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.720
TGAM01_v209844
Uncharacterized protein.
    
 0.718
TGAM01_v207192
U2 small nuclear ribonucleoprotein B.
    
 0.718
Your Current Organism:
Trichoderma gamsii
NCBI taxonomy Id: 398673
Other names: BPI 872183, C.P.K. 2074, CBS 120075, CPK 2074, FMR 12636, G.J.S. 06-09, GJS 06-09, T. gamsii, Trichoderma gamsii Samuels & Druzhinina, 2006, Trichoderma sp. GJS 04-09
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