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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORB71510.1CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (306 aa)    
Predicted Functional Partners:
ORB71525.1
CoA ester lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
  
  
0.913
ORB71290.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.754
ORB72112.1
Fuculose phosphate aldolase; Catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.710
ORB65815.1
acetyl-CoA carboxyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.694
ORB63332.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.673
ORB71615.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.648
ORB69133.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.621
ORB67352.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.621
ORB71509.1
MxaD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.600
purD
Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family.
     
 0.596
Your Current Organism:
Mycobacterium shinjukuense
NCBI taxonomy Id: 398694
Other names: CCUG 53584, DSM 45663, JCM 14233, M. shinjukuense, Mycobacterium shinjukuense Saito et al. 2011, Mycobacterium sp. GTC2738, strain GTC 2738
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