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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORB71516.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
ORB70516.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.927
BST45_01665
PE family protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
ORB71730.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
ORB70510.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
ORB70517.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
ORB62851.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
ORB62852.1
Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
ORB62311.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
ORB61392.1
Poly(3-hydroxyalkanoate) depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
ORB61127.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.926
Your Current Organism:
Mycobacterium shinjukuense
NCBI taxonomy Id: 398694
Other names: CCUG 53584, DSM 45663, JCM 14233, M. shinjukuense, Mycobacterium shinjukuense Saito et al. 2011, Mycobacterium sp. GTC2738, strain GTC 2738
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