STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ49925.1Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (283 aa)    
Predicted Functional Partners:
EAQ49927.1
COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.726
EAQ49926.1
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
     0.713
EAQ49931.1
COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.675
EAQ48003.1
Putative AraC-family transcriptional regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
   0.675
EAQ49924.1
Hypothetical protein.
       0.615
EAQ48170.1
Probable transcription regulator protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.588
EAQ49750.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.551
EAQ49929.1
Proline racemase, putative; COG3938 Proline racemase; Belongs to the proline racemase family.
 
     0.471
EAQ50896.1
Transcriptional regulator PobR; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.458
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.444
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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