STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ50260.1COG3210 Large exoproteins involved in heme utilization or adhesion. (342 aa)    
Predicted Functional Partners:
EAQ50264.1
COG1462 Uncharacterized protein involved in formation of curli polymers.
 
  
 0.880
EAQ50263.1
Curli production assembly/transport component, CsgF.
 
   
 0.868
EAQ50265.1
Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
 
     0.859
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.611
EAQ48747.1
DNA topoisomerase IV subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
    
 
 0.611
EAQ50261.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
       0.495
EAQ48154.1
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.464
EAQ47838.1
Peptidoglycan-binding LysM; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
   
 
 0.430
EAQ50262.1
Hypothetical protein.
       0.426
EAQ48899.1
COG0094 Ribosomal protein L5.
  
     0.419
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.