STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ50458.1Mobilisation protein C; COG3505 Type IV secretory pathway, VirD4 components. (529 aa)    
Predicted Functional Partners:
EAQ50457.1
Mobilization protein B; COG0419 ATPase involved in DNA repair.
 
     0.950
EAQ50468.1
TraG-like protein; COG3451 Type IV secretory pathway, VirB4 components.
 
  
 0.810
EAQ50463.1
Conserved protein found in conjugate transposon TraN.
 
     0.790
EAQ50464.1
TraM-like protein; COG1253 Hemolysins and related proteins containing CBS domains.
 
     0.790
EAQ50465.1
Conserved protein found in conjugate transposon TraK.
 
     0.790
EAQ50467.1
Conserved protein found in conjugate transposon; COG1196 Chromosome segregation ATPases.
  
     0.775
EAQ50479.1
Hypothetical protein; COG0465 ATP-dependent Zn proteases.
 
     0.775
EAQ50991.1
Hypothetical protein.
  
     0.774
EAQ47880.1
COG1491 Predicted RNA-binding protein.
  
     0.774
EAQ50481.1
Hypothetical protein; COG0210 Superfamily I DNA and RNA helicases.
 
     0.748
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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