STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ48585.1COG0464 ATPases of the AAA+ class. (441 aa)    
Predicted Functional Partners:
EAQ48596.1
COG3500 Phage protein D.
 
     0.933
EAQ49766.1
Histidine Kinase; COG0323 DNA mismatch repair enzyme (predicted ATPase).
   
 0.931
EAQ48590.1
Hypothetical protein.
 
 
 0.931
EAQ48587.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.924
EAQ48822.1
TPR repeat protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
   
 0.923
EAQ48601.1
COG3497 Phage tail sheath protein FI.
     0.921
EAQ48592.1
Hypothetical protein.
 
     0.918
EAQ48593.1
Hypothetical protein.
 
     0.918
EAQ48594.1
COG3628 Phage baseplate assembly protein W.
 
     0.918
EAQ48595.1
Hypothetical protein.
 
     0.915
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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