STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ48832.1Type IV site-specific deoxyribonuclease Eco57I related protein; COG1002 Type II restriction enzyme, methylase subunits. (1026 aa)    
Predicted Functional Partners:
EAQ48423.1
Type I restriction-modification system specificity subunit; COG0732 Restriction endonuclease S subunits.
  
 
 0.933
EAQ48831.1
COG4694 Uncharacterized protein conserved in bacteria.
       0.628
EAQ48833.1
Hypothetical protein.
       0.572
EAQ50380.1
Hypothetical protein.
  
 
 0.478
EAQ48427.1
COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases.
  
 
 0.478
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
   0.448
EAQ50979.1
COG1112 Superfamily I DNA and RNA helicases and helicase subunits.
 
    0.410
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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