STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ48887.1COG0236 Acyl carrier protein. (197 aa)    
Predicted Functional Partners:
EAQ49854.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
 0.973
EAQ49400.1
4Fe-4S ferredoxin, iron-sulfur binding; COG1145 Ferredoxin.
   
 0.951
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.927
EAQ50069.1
Hypothetical protein.
  
 0.906
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.903
EAQ49837.1
Deoxynucleoside kinase; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.
   
 0.899
EAQ49878.1
Deoxyguanosine kinase/deoxyadenosine kinase subunit; COG1428 Deoxynucleoside kinases.
   
 0.898
fabZ
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.892
EAQ50181.1
COG0203 Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.886
EAQ47889.1
3-oxoacyl-(acyl carrier protein) synthase; COG0333 Ribosomal protein L32.
  
   0.886
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.