STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ49435.1Rhamnogalacturonate lyase; COG3210 Large exoproteins involved in heme utilization or adhesion. (954 aa)    
Predicted Functional Partners:
EAQ49792.1
Putative pectinesterase precursor; COG4677 Pectin methylesterase.
  
   
 0.720
EAQ48635.1
Putative pectinesterase precursor; COG4677 Pectin methylesterase.
  
   
 0.556
EAQ50051.1
Putative lipoprotein; COG3669 Alpha-L-fucosidase.
  
     0.475
EAQ49436.1
Hypothetical protein; COG1201 Lhr-like helicases.
       0.471
EAQ49276.1
Beta-glucanase precursor; Belongs to the glycosyl hydrolase 43 family.
  
     0.459
EAQ48868.1
Beta-glucanase precursor; Belongs to the glycosyl hydrolase 43 family.
  
     0.442
EAQ48632.1
Putative pectinesterase precursor; COG0657 Esterase/lipase.
  
   
 0.435
EAQ50054.1
COG4692 Predicted neuraminidase (sialidase).
  
     0.433
EAQ48517.1
exo-poly-alpha-D-galacturonosidase precursor; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
     0.416
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
     0.408
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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