STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ48382.1Putative excisionase; COG3311 Predicted transcriptional regulator. (95 aa)    
Predicted Functional Partners:
EAQ48910.1
COG0067 Glutamate synthase domain 1.
    
  0.883
EAQ48383.1
Hypothetical protein; COG1401 GTPase subunit of restriction endonuclease.
 
     0.836
EAQ50558.1
Mobilizable transposon, int protein; COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.767
EAQ50526.1
Tyrosine type site-specific recombinase; COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.765
EAQ48386.1
Mobilization protein.
 
     0.736
EAQ48381.1
Tyrosine type site-specific recombinase; COG0419 ATPase involved in DNA repair; Belongs to the 'phage' integrase family.
 
     0.716
EAQ48384.1
COG0358 DNA primase (bacterial type).
 
   
 0.646
EAQ50553.1
Mobilization protein.
  
     0.645
EAQ50555.1
COG0358 DNA primase (bacterial type).
 
   
 0.438
EAQ47884.1
Transposase; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.410
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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