STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ48434.1COG2378 Predicted transcriptional regulator. (318 aa)    
Predicted Functional Partners:
EAQ48432.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
 
     0.837
EAQ50530.1
Hypothetical protein; COG1793 ATP-dependent DNA ligase.
  
     0.773
EAQ49827.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
    
  0.640
EAQ47789.1
COG0643 Chemotaxis protein histidine kinase and related kinases.
  
 
   0.601
EAQ48433.1
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.590
EAQ48464.1
Nuclease subunit Cho of the excinuclease complex (UvrC-like protein); COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
    
  0.567
EAQ48435.1
Hypothetical protein.
       0.561
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.547
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.547
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.547
Your Current Organism:
Leeuwenhoekiella blandensis
NCBI taxonomy Id: 398720
Other names: Flavobacterium sp. MED217, L. blandensis MED217, Leeuwenhoekiella blandensis MED217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.