STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_1246130Phytochromobilin:ferredoxin oxidoreductase, chloroplast, putative. (330 aa)    
Predicted Functional Partners:
RCOM_0223730
Uncharacterized protein.
     
 0.950
RCOM_1550090
Cyclin; Belongs to the cyclin family.
      
 0.567
RCOM_1437130
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
      
 0.561
RCOM_0373990
Magnesium-chelatase subunit H, putative.
      
 0.523
RCOM_0655990
Tetrapyrrole-binding protein, chloroplast, putative.
      
 0.523
RCOM_1346530
Pentatricopeptide repeat-containing protein, putative.
      
 0.509
RCOM_1493770
30S ribosomal protein S17, putative; Belongs to the universal ribosomal protein uS17 family.
      
 0.499
RCOM_1000590
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
      
 0.499
RCOM_1035330
DNA photolyase, putative.
      
 0.418
RCOM_0924540
Transcription factor hy5, putative.
      
 0.410
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.