STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0679510Shikimate dehydrogenase, putative. (539 aa)    
Predicted Functional Partners:
RCOM_0572340
3-dehydroquinate synthase, putative.
 
 
 
 0.953
RCOM_0297460
Shikimate kinase, chloroplast, putative.
  
 
 0.951
RCOM_1969210
Uncharacterized protein.
  
 
 0.951
RCOM_1036940
Phospho-2-dehydro-3-deoxyheptonate aldolase.
  
 0.928
RCOM_0838150
Tryptophan biosynthesis protein, putative.
     
 0.907
RCOM_0121060
Phospho-2-dehydro-3-deoxyheptonate aldolase.
  
 0.897
RCOM_0768440
Phospho-2-dehydro-3-deoxyheptonate aldolase.
  
 0.897
RCOM_0437060
Anthranilate synthase component II, putative.
  
 
 0.864
RCOM_1909160
Tryptophan biosynthesis protein, trpf, putative.
  
 
 0.864
RCOM_0624660
Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.
    
 0.806
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.