STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCOM_0964880ATP binding protein, putative. (516 aa)    
Predicted Functional Partners:
RCOM_1595310
Cyclin-dependent protein kinase, putative; Belongs to the cyclin family.
    
 0.639
RCOM_0618070
Uncharacterized protein.
    
 0.639
RCOM_0243690
Cak1, putative; Belongs to the protein kinase superfamily.
  
 
0.628
RCOM_1454570
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.618
RCOM_1432330
Cyclin h, putative; Belongs to the cyclin family.
    
 0.599
RCOM_1575560
Cyclin-L2, putative; Belongs to the cyclin family.
    
 0.595
RCOM_0913990
Cyclin-L1, putative; Belongs to the cyclin family.
    
 0.595
RCOM_0811900
DNA-directed RNA polymerase II subunit, putative.
   
 
 0.589
RCOM_1091910
DNA repair protein xp-E, putative.
    
 
 0.570
RCOM_0855030
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
     
 0.529
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.